A Global Optimization Approach for Scaffolding and Completing Genome Assemblies


This work focuses simultaneously on both the scaffolding and gap filling phases of de nouveau genome assembly. Given a set of contigs and their relationships--overlaps and/or remoteness  in terms of distances between... [ view full abstract ]


  1. Sebastien Francois (IRISA/INRIA, Rennes)
  2. Rumen Andonov (IRISA/INRIA, Rennes)
  3. Dominique Lavenier (IRISA/INRIA, Rennes)
  4. Hristo Djidjev (Los Alamos National Laboratory)

Topic Areas

Whole genome assemblers and integration of next generation dataTopic #1 , Next generation finishing tools, technologies and pipelines , De novo assemblers for short reads, hybrid assemblers


OS-5 » Metagenomics, Informatics, Assembly & Analysis (14:00 - Wednesday, 17th May, La Fonda Ballroom)

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